Windows 10 and Boot Time

Hi,
I do have a problem with Windows 10 and the boot sequence. Roling out software or patches "at boot time" does not work for days. I think it has something to do with the new quick startup features of windows 10.
If I take a look at the overview of all systems many of them show a "last boot time" of days ago - and I know they are shut down every evening. If some Microsoft patches require a reboot, the boot time is shown right and the patches delivered "at boot time" get applied.

The problem is, that in this manner some third party security patches are waiting ("yet to apply") for days.
If I shutdown the pc holding the shift key, everything seems to be applied as it used to be (with windows 7).

Any idea how to overcome this behavour?
Thanks,
Juergen