Upgrade from 9039 to 9040 or 9041 failing

Upgrade from 9039 to 9040 or 9041 failing

Trying to upgrade but it keeps failing during the initial extraction. From updatemgrlog0.txt...

May 4, 2015 7:15:05 PM  [com.adventnet.tools.update.installer.UpdateManager]  [INFO] : 
May 4, 2015 7:15:05 PM  [com.adventnet.tools.update.installer.UpdateManager]  [INFO] : Invoking UpdateManager in UI mode
May 4, 2015 7:15:18 PM  [com.adventnet.tools.update.installer.ApplyPatch]  [INFO] : The ppm file path:C:\Temp\ManageEngine_ServiceDesk_Plus_9_0_0_SP-0_41_0.ppm
May 4, 2015 7:15:18 PM  [com.adventnet.tools.update.installer.ApplyPatch]  [INFO] : The ppm file path:C:\Temp\ManageEngine_ServiceDesk_Plus_9_0_0_SP-0_41_0.ppm
May 4, 2015 7:15:18 PM  [com.adventnet.tools.update.installer.ApplyPatch]  [INFO] : The Patch Version:AdventNet_ManageEngine_ServiceDesk_Plus-9.0.0-SP-0.41.0
May 4, 2015 7:15:18 PM  [com.adventnet.tools.update.installer.ApplyPatch]  [INFO] : Context NameSERVICEDESK
May 4, 2015 7:15:18 PM  [com.adventnet.tools.update.installer.Unzipper]  [INFO] : Pre Invocation in progress
May 4, 2015 7:15:18 PM  [com.adventnet.tools.update.installer.Unzipper]  [INFO] : Executing class:com/adventnet/servicedesk/updatemgr/util/JreVersionHandler.class
May 4, 2015 7:15:18 PM  [com.adventnet.servicedesk.updatemgr.util.JreVersionHandler]  [INFO] : Inside Install patch
May 4, 2015 7:15:18 PM  [com.adventnet.tools.update.installer.Unzipper]  [INFO] : Executing class:com/adventnet/persistence/EEARExtractor.class
May 4, 2015 7:15:18 PM  [com.adventnet.persistence.EEARExtractor]  [INFO] : Going to extract the eear [.\applications/AdventNetCC.eear]
May 4, 2015 7:15:18 PM  [com.adventnet.j2ee.deployment.service.internal.JarExtractor]  [INFO] : Extraction for D:\ServiceDesk\.\applications\AdventNetCC.eear  to D:\ServiceDesk\.\applications\extracted\AdventNetCC.eear
May 4, 2015 7:15:18 PM  [com.adventnet.persistence.EEARExtractor]  [INFO] : Successfully extracted the eear [.\applications/AdventNetCC.eear].
May 4, 2015 7:15:18 PM  [com.adventnet.persistence.EEARExtractor]  [INFO] : Going to extract the eear [.\applications/AdventNetServerContainer.eear]
May 4, 2015 7:15:18 PM  [com.adventnet.j2ee.deployment.service.internal.JarExtractor]  [INFO] : Extraction for D:\ServiceDesk\.\applications\AdventNetServerContainer.eear  to D:\ServiceDesk\.\applications\extracted\AdventNetServerContainer.eear
May 4, 2015 7:15:18 PM  [com.adventnet.persistence.EEARExtractor]  [INFO] : Successfully extracted the eear [.\applications/AdventNetServerContainer.eear].
May 4, 2015 7:15:18 PM  [com.adventnet.persistence.EEARExtractor]  [INFO] : Going to extract the eear [.\applications/AdventNetServiceDesk.eear]
May 4, 2015 7:15:18 PM  [com.adventnet.j2ee.deployment.service.internal.JarExtractor]  [INFO] : Extraction for D:\ServiceDesk\.\applications\AdventNetServiceDesk.eear  to D:\ServiceDesk\.\applications\extracted\AdventNetServiceDesk.eear
May 4, 2015 7:15:24 PM  [com.adventnet.persistence.EEARExtractor]  [SEVERE] : Exception occurred while extracting eear :: [.\applications/AdventNetServiceDesk.eear] :: .\applications/AdventNetServiceDesk.eear

And it stops with that SEVERE error using either version. Tried removing the Patch folder and it recreated it and failed again.

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