Desktop Central Agents (9.2.041) not installing from Group Policy after upgrade.

I am not sure if anyone else has run into this problem but I am stuck on a problem with deploying agents through Group Policy.

Previously I pushed the agents through Software Installation in Group Policy with out any problems while using version 9.0. I have a folder structure setup with the software listed for the my different sites.

Since upgrading to the current version (9.2.041) the agents will not deploy. I tried to run the installer from the network and locally which brings me to a prompt that tells me to run "Setup.bat".

How do I remove the prompt so the agents will begin installing again? This is causing a lot of problems in my production environment.